CDS:PFLU_0016-0

Annotations
Contact
Cross Reference
Location on Map
Properties
Publication
Relationship
Sequences
Summary
Annotations
Annotations: 
This record has the following annotations.
TermNameDefinition
GO:0008649rRNA methyltransferase activityCatalysis of the transfer of a methyl group from S-adenosyl-L-methionine to a nucleoside residue in an rRNA molecule. [GOC:mah]
GO:0006355regulation of transcription, DNA-templatedAny process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH]
GO:0005737cytoplasmThe contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684]
GO:0003723RNA bindingBinding to an RNA molecule or a portion thereof. [GOC:jl, GOC:mah]
GO:0051994P-methyltransferase activityCatalysis of the transfer of a methyl group to the phosphorus atom of an acceptor molecule. [GOC:ai]
Contact
Contact: 
NameDescriptionType
There are no contacts available.
Cross Reference
Cross Reference: 
EMBL
  • AM181176
EggNOG
InterPro
KEGG
MPBAS00001
OrthoDB
PRINTS
  • PR02008
Pfam
Pubmed
RefSeq
STRING
SUPFAM
TIGRFAMs
Location on Map
Location on Map: 
MapPositionMap Description
This are no positions on any maps.
Properties
Similarity
  • SIMILARITY: Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. {ECO:0000256|ARBA:ARBA00007494, ECO:0000256|PROSITE-ProRule:PRU01023}.
  • fasta; with=UniProt:RSMB_ECOLI (EMBL:CEK131EZR); Escherichia coli.; rsmB; Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-) (rRNA (cytosine-C(5)-)-methyltransferase) (16S rRNA m5C967 methyltransferase).; length=429; id 50.580%; ungapped id 51.781%; E()=5.2e-76; 431 aa overlap; query 2-430; subject 6-428
  • fasta; with=UniProt:RSMB_PSEPK (EMBL:AE016774); Pseudomonas putida (strain KT2440).; rsmB; Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-) (rRNA (cytosine-C(5)-)-methyltransferase) (16S rRNA m5C967 methyltransferase).; length=436; id 85.780%; ungapped id 85.780%; E()=5e-153; 436 aa overlap; query 1-436; subject 1-436
Codon Start
1
Uniprot Annotation Score
3 out of 5
Ft Domain
DOMAIN 161..431; note:SAM_MT_RSMB_NOP; evidence:ECO:0000259|PROSITE:PS51686
Gene
rsmB
Product
  • 16S rRNA m5C967 methyltransferase (EC 2.1.1.176) (rRNA (cytosine-C(5)-)-methyltransferase RsmB)
  • ribosomal RNA small subunit methyltransferase B
Annotated Protein Regions
REGION 251..257; note:S-adenosyl-L-methionine binding; evidence:ECO:0000256|PROSITE-ProRule:PRU01023
Uniprot Review Status
unreviewed
Protein Id
CAY46301.1
Frame
0
Inference
Inferred from homology
Confidence Level
2
Seqid
MPBAS00001
Locus Tag
PFLU_0016
Features
Active site (1); Binding site (3); Coiled coil (1); Domain (1); Region (1)
Protein Families
Class I-like SAM-binding methyltransferase superfamily, RsmB/NOP family
Publication
Publication: 
There are no publications associated with this record.
Relationship
Relationship: 
There are 0 relationships.
Relationships
There are no relationships
Sequences
Sequence
No sequence is available.
Sequence Length
Sequence Checksum
d41d8cd98f00b204e9800998ecf8427e
Sequence Coordinates
MPBAS00001:18654..19964-
Summary
Resource Type
CDS
Accession
Organism
Pseudomonas fluorescens
Name
CDS:PFLU_0016-0
Identifier
CDS:PFLU_0016-0
Is Analysis
No
Is Obsolete
No
Time Accessioned
Thursday, February 24, 2022 - 23:06
Time Last Modified
Thursday, February 24, 2022 - 23:06